LICENSE.txt
MANIFEST.in
README.rst
distribute-0.6.10.tar.gz
distribute_setup.py
setup.cfg
setup.py
bin/cpat.py
bin/make_hexamer_tab.py
bin/make_logitModel.py
dat/Fly_logitModel.RData
dat/Human_Hexamer.tsv
dat/Human_cutoff.txt
dat/Human_logitModel.RData
dat/Mouse_Hexamer.tsv
dat/Mouse_cutoff.txt
dat/Mouse_logitModel.RData
dat/Zebrafish_logitModel.RData
dat/fly_Hexamer.tsv
dat/fly_cutoff.txt
dat/zebrafish_Hexamer.tsv
dat/zebrafish_cutoff.txt
doc/INSTALL.txt
doc/LICENSE.txt
doc/Manual.txt
lib/psyco_full.py
lib/CPAT.egg-info/PKG-INFO
lib/CPAT.egg-info/SOURCES.txt
lib/CPAT.egg-info/dependency_links.txt
lib/CPAT.egg-info/not-zip-safe
lib/CPAT.egg-info/requires.txt
lib/CPAT.egg-info/top_level.txt
lib/cpmodule/FrameKmer.py
lib/cpmodule/__init__.py
lib/cpmodule/dotProduct.py
lib/cpmodule/fasta.py
lib/cpmodule/fickett.py
lib/cpmodule/ireader.py
lib/cpmodule/mystat.py
lib/cpmodule/orf.py
lib/cpmodule/wiggle.py
src/binBits.c
src/binBits.h
src/cluster.c
src/cluster.h
src/pwm_utils.c
src/pwm_utils.h
src/bunzip/micro-bunzip.c
src/bunzip/micro-bunzip.h
src/kent/bits.c
src/kent/bits.h
src/kent/common.c
src/kent/common.h
src/samtools/bgzf.c
src/samtools/bgzf.h
src/samtools/khash.h
test/Human_coding_transcripts_CDS.fa
test/Human_coding_transcripts_hg19.bed
test/Human_coding_transcripts_mRNA.fa
test/Human_noncoding_transcripts_RNA.fa
test/Human_noncoding_transcripts_hg19.bed
test/Human_test_coding_mRNA.fa
test/Human_test_coding_mRNA_hg19.bed
test/Human_test_noncoding_RNA.fa
test/Human_test_noncoding_hg19.bed