Metadata-Version: 2.1
Name: CIRIquant
Version: 1.1
Summary: circular RNA quantification pipeline
Home-page: https://github.com/Kevinzjy/CIRIquant
Author: Jinyang Zhang
Author-email: zhangjinyang@biols.ac.cn
Maintainer: Jinyang Zhang
Maintainer-email: zhangjinyang@biols.ac.cn
License: MIT
Keywords: circRNA
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
Requires-Dist: argparse (==1.2.1)
Requires-Dist: PyYAML (==5.1.1)
Requires-Dist: pysam (==0.15.2)
Requires-Dist: numpy (==1.16.4)
Requires-Dist: scipy (==1.2.2)
Requires-Dist: scikit-learn (==0.20.3)
Requires-Dist: numexpr (==2.6.9)

## CIRIquant ##

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CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

### Documentation ### 

Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html)

### Author ###

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

### Release Notes ###

- Version 1.1: Added support for stranded library and GFF3 format input.
- Version 1.0: The first released version of CIRIquant.

### License ###

The code is released under the MIT License. See the `LICENSE` file for more detail.

### Citing CIRIquant

- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9)


