.hgignore
.hgtags
.style.yapf
.travis.yml
AUTHORS
CHANGELOG
LICENSE.txt
Makefile
README.rst
TODO
rtd-requirements.txt
setup.cfg
setup.py
doc/Makefile
doc/conf.py
doc/description.txt
doc/development.rst
doc/examples.rst
doc/grammar.rst
doc/hgvs_railroad.rst
doc/index.rst
doc/installation.rst
doc/intro.rst
doc/key_concepts.rst
doc/license.rst
doc/privacy.rst
doc/quick_start.rst
doc/reference.rst
doc/changelog/0.0-0.3.rst
doc/changelog/0.4.0.clog
doc/changelog/0.4.0.rst
doc/changelog/0.4.1.clog
doc/changelog/0.4.1.rst
doc/changelog/0.4.rst
doc/changelog/Makefile
doc/changelog/index.rst
doc/changelog/upcoming.rst
doc/examples/creating-a-variant.rst
doc/examples/manuscript-example.rst
doc/examples/rs509749-auto-liftover.rst
doc/examples/rs509749-manual-liftover.rst
doc/hgvs_railroad/Not_Yet_Implemented.svg
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doc/hgvs_railroad/aa13.svg
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doc/hgvs_railroad/aa3.svg
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doc/hgvs_railroad/snum.svg
doc/hgvs_railroad/term1.svg
doc/hgvs_railroad/term13.svg
doc/hgvs_railroad/term3.svg
doc/images/mapping-tools.svg
doc/images/object-diagram.svg
doc/modules/dataproviders.rst
doc/modules/index.rst
doc/modules/io.rst
doc/modules/mapping.rst
doc/modules/overview.rst
doc/modules/validation.rst
doc/modules/vor.rst
doc/static/favicon.ico
doc/static/logo.svg
doc/themes/invitae/instlogo.html
doc/themes/invitae/layout.html
doc/themes/invitae/theme.conf
doc/themes/invitae/static/dialog-note.png
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doc/themes/invitae/static/invitae.png
doc/themes/invitae/static/middlebg.png
doc/themes/invitae/static/transparent.gif
examples/Makefile
examples/README
examples/creating-a-variant.ipynb
examples/manuscript-example.ipynb
examples/rs509749-auto-liftover.ipynb
examples/rs509749-manual-liftover.ipynb
hgvs/__init__.py
hgvs/config.py
hgvs/edit.py
hgvs/exceptions.py
hgvs/hgvsposition.py
hgvs/intervalmapper.py
hgvs/location.py
hgvs/normalizer.py
hgvs/parser.py
hgvs/posedit.py
hgvs/projector.py
hgvs/transcriptmapper.py
hgvs/validator.py
hgvs/variant.py
hgvs/variantmapper.py
hgvs.egg-info/PKG-INFO
hgvs.egg-info/SOURCES.txt
hgvs.egg-info/dependency_links.txt
hgvs.egg-info/requires.txt
hgvs.egg-info/top_level.txt
hgvs.egg-info/zip-safe
hgvs/_data/defaults.ini
hgvs/_data/hgvs.pymeta
hgvs/_data/invitae.pymeta
hgvs/dataproviders/__init__.py
hgvs/dataproviders/interface.py
hgvs/dataproviders/seqfetcher.py
hgvs/dataproviders/uta.py
hgvs/decorators/__init__.py
hgvs/decorators/deprecated.py
hgvs/decorators/lru_cache.py
hgvs/utils/__init__.py
hgvs/utils/altseq_to_hgvsp.py
hgvs/utils/altseqbuilder.py
hgvs/utils/norm.py
misc/Laros-grammar.txt
misc/samtools-bug.sh
misc/experimental/test.vcf
misc/experimental/vcf-add-hgvs
misc/experimental/tx-ref-discrepancies/tx-ref-discrepancies
misc/figures/mapping-tools.odg
misc/figures/object-diagram.odg
misc/logo/Makefile
misc/logo/favicon.ico
misc/logo/hgvs-logo.ico
misc/logo/hgvs-logo.odg
misc/logo/hgvs-logo.png
misc/logo/hgvs-logo.svg
misc/mutalyzer-comparison/Makefile
misc/mutalyzer-comparison/README
misc/mutalyzer-comparison/snp_hgvs.sql
misc/mutalyzer-comparison/views.sql
misc/mutalyzer-comparison/bin/chunk
misc/mutalyzer-comparison/bin/hgvs-g-to-c
misc/mutalyzer-comparison/bin/hgvs-mutalyzer-compare
misc/mutalyzer-comparison/bin/snp_hgvs-to-sql
misc/pythonhosted-forward/index.html
misc/railroad/Makefile
misc/railroad/README
misc/railroad/hgvs-syntax-diagram.html
misc/railroad/make-hgvs-railroad-doc
misc/railroad/pymeta-to-ebnf
misc/railroad/redact-html
sbin/conf-to-vars
sbin/cpu-info
sbin/extract-makefile-documentation
sbin/get-dbsnp-tests-for-gene
sbin/hgvs-shell
sbin/seq-fetch
sbin/test-runner
sbin/test-stats
tests/test_hgvs_dataproviders_uta.py
tests/test_hgvs_edit.py
tests/test_hgvs_grammar.py
tests/test_hgvs_grammar_full.py
tests/test_hgvs_hgvsposition.py
tests/test_hgvs_intervalmapper.py
tests/test_hgvs_location.py
tests/test_hgvs_normalizer.py
tests/test_hgvs_parser.py
tests/test_hgvs_posedit.py
tests/test_hgvs_projector.py
tests/test_hgvs_transcriptmapper.py
tests/test_hgvs_validator.py
tests/test_hgvs_variant.py
tests/test_hgvs_variantmapper.py
tests/test_hgvs_variantmapper_cp_altseqbuilder.py
tests/test_hgvs_variantmapper_cp_real.py
tests/test_hgvs_variantmapper_cp_sanity.py
tests/test_hgvs_variantmapper_gcp.py
tests/test_hgvs_variantmapper_gcp_sqlite.py
tests/bin/build-ref-repl
tests/bug-examples/220
tests/bug-examples/274.py
tests/data/exemplars.vcf.gz
tests/data/ext.tsv
tests/data/extra
tests/data/garcia.tsv
tests/data/gauntlet
tests/data/grammar_test.tsv
tests/data/reject
tests/data/sanity_cp.tsv
tests/data/sqlite_test_gcp.tsv
tests/data/gcp/ADRA2B-dbSNP.tsv
tests/data/gcp/BAHCC1-dbSNP.tsv
tests/data/gcp/DNAH11-HGMD.tsv
tests/data/gcp/DNAH11-dbSNP-NM_001277115.tsv
tests/data/gcp/DNAH11-dbSNP-NM_003777.tsv
tests/data/gcp/DNAH11-dbSNP.tsv
tests/data/gcp/FOLR3-dbSNP.tsv
tests/data/gcp/JRK-dbSNP.tsv
tests/data/gcp/NEFL-dbSNP.tsv
tests/data/gcp/ORAI1-dbSNP.tsv
tests/data/gcp/ZCCHC3-dbSNP.tsv
tests/data/gcp/noncoding.tsv
tests/data/gcp/real.tsv
tests/data/gcp/regression.tsv
tests/data/sample_data/f1.human.protein.small.faa
tests/data/sample_data/f1.human.protein.small.faa.fai
tests/data/sample_data/f2.human.rna.small.fna
tests/data/sample_data/f2.human.rna.small.fna.fai
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