Metadata-Version: 2.1
Name: pysces
Version: 1.2.2
Summary: The Python Simulator for Cellular Systems - simulation and analysis tools for modelling biological systems
Keywords: computational systems biology,modelling,simulation,systems biology
Home-page: https://pysces.github.io
Author-Email: Brett Olivier <pysces@googlegroups.com>, Johann Rohwer <pysces@googlegroups.com>
Maintainer-Email: Brett Olivier <pysces@googlegroups.com>, Johann Rohwer <pysces@googlegroups.com>
License: BSD 3-Clause
Classifier: Development Status :: 5 - Production/Stable
Classifier: Development Status :: 6 - Mature
Classifier: Environment :: Console
Classifier: Intended Audience :: End Users/Desktop
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Fortran
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Chemistry
Project-URL: Homepage, https://pysces.github.io
Project-URL: Documentation, https://pyscesdocs.readthedocs.io
Project-URL: Source, https://github.com/PySCeS/pysces
Project-URL: Download, https://github.com/PySCeS/pysces/releases
Project-URL: Tracker, https://github.com/PySCeS/pysces/issues
Requires-Python: >=3.9
Requires-Dist: numpy>=1.23.5
Requires-Dist: matplotlib
Requires-Dist: scipy
Requires-Dist: ipyparallel; extra == "parscan"
Requires-Dist: multiprocessing_on_dill; extra == "parscan"
Requires-Dist: assimulo; extra == "cvode"
Requires-Dist: python_libsbml; extra == "sbml"
Requires-Dist: ipyparallel; extra == "all"
Requires-Dist: multiprocessing_on_dill; extra == "all"
Requires-Dist: assimulo; extra == "all"
Requires-Dist: python_libsbml; extra == "all"
Provides-Extra: parscan
Provides-Extra: cvode
Provides-Extra: sbml
Provides-Extra: all
Description-Content-Type: text/markdown

# PySCeS - the Python Simulator for Cellular Systems

PySCeS was originally developed by the Triple-J Group for Molecular 
Cell Physiology at Stellenbosch University in order to try to model and understand the 
complex processes and systems which make up the living cell. The project is 
maintained by Brett Olivier (AIMMS, Vrije Universiteit Amsterdam) and Johann Rohwer 
(Laboratory for Molecular Systems Biology, Stellenbosch University).

PySCeS features, amongst other things:
- A text-based model description language.
- A structural analysis module.
- Integrators for time simulation.
- Non-linear solvers for steady-state analysis.
- A module for performing Metabolic Control Analysis.
- A bifurcation module for systems which exhibit multiple steady states.
- A variety of extra utilities for parameter scans, data output and plotting.
- A dynamic module loading framework.
- Systems Biology Markup Language (SBML) import and export capability.