Metadata-Version: 2.1
Name: dnacauldron
Version: 2.0.3
Summary: Cloning simulation for DNA assembly (Golden Gate, Gibson...)
Home-page: https://github.com/Edinburgh-Genome-Foundry/DnaCauldron
Author: Zulko
License: MIT
Keywords: DNA assembly cloning simulator synthetic biology
Platform: UNKNOWN
Requires-Dist: Biopython
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: fuzzywuzzy
Requires-Dist: pandas
Requires-Dist: scipy
Requires-Dist: networkx
Requires-Dist: dna-features-viewer
Requires-Dist: flametree
Requires-Dist: snapgene-reader
Requires-Dist: proglog
Requires-Dist: xlwt
Requires-Dist: openpyxl
Requires-Dist: python-Levenshtein
Requires-Dist: xlrd
Provides-Extra: reports
Requires-Dist: pdf-reports ; extra == 'reports'

DNA Cauldron
===================

DNA Cauldron provides a generic cloning simulation framework to predict
constructs sequences and detect assembly flaws.
It can simulate Golden-Gate, with extra features like enzyme or
connector parts autoselection, and other methods like Gibson Assembly,
LCR Assembly, BASIC assembly, BioBrick assembly.
It supports single and combinatorial assemblies, hierarchical assemblies, and
produces nice reports for traceability and troubleshooting.


Infos
-----

**PIP installation:**

.. code:: bash

  pip install dnacauldron

**Web documentation:**

`<https://edinburgh-genome-foundry.github.io/DnaCauldron/>`_

**Github Page:**

`<https://github.com/Edinburgh-Genome-Foundry/DnaCauldron>`_

**Live demo:**

`<http://cuba.genomefoundry.org/simulate_gg_assemblies>`_

**License:** MIT, Copyright Edinburgh Genome Foundry

More biology software
---------------------

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
  :target: https://edinburgh-genome-foundry.github.io/

DNA Cauldron is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.


