Metadata-Version: 2.4
Name: genome-grist
Version: 0.11.1
Summary: tools to support genome and metagenome analysis
Author: C. Titus Brown, Luiz Irber, N. Tessa Pierce-Ward, Taylor Reiter
Classifier: Environment :: Console
Classifier: Environment :: MacOS X
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.12
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: snakemake
Requires-Dist: click<9,>=7
Requires-Dist: lxml==5.3.1
Requires-Dist: pandas<3,>1
Requires-Dist: get-some-ncbi-genomes==0.3
Provides-Extra: test
Requires-Dist: sourmash<5,>=4.9.0; extra == "test"
Requires-Dist: pytest<8.4.0,>=6.2.4; extra == "test"
Requires-Dist: pytest-dependency==0.5.1; extra == "test"
Dynamic: license-file

# genome-grist README

<!-- CTB: this is /README.md in dib-lab/genome-grist -->

<a href="https://pypi.org/project/genome-grist/"><img alt="PyPI" src="https://badge.fury.io/py/genome-grist.svg"></a>
<img alt="License: 3-Clause BSD" src="https://img.shields.io/badge/License-BSD%203--Clause-blue.svg">

genome-grist analyzes the strain composition of microbial metagenomes
using
[minimum metagenome covers](https://dib-lab.github.io/2020-paper-sourmash-gather/)
and produces a variety of compositional and taxonomic summaries.

Check out the
[quick start!](https://dib-lab.github.io/genome-grist/quickstart/) And
please also see
[the rest of the docs](https://dib-lab.github.io/genome-grist/) for
more information!

## Example: the strain composition of a gut microbiome (iHMP)

This figure was autogenerated by genome-grist.

![an example image made with genome-grist](doc/gather-vs-mapping.png)

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[CTB](https://twitter.com/ctitusbrown/) 01/22
