MANIFEST.in
setup.cfg
setup.py
version.py
src/toil_scripts/__init__.py
src/toil_scripts.egg-info/PKG-INFO
src/toil_scripts.egg-info/SOURCES.txt
src/toil_scripts.egg-info/dependency_links.txt
src/toil_scripts.egg-info/entry_points.txt
src/toil_scripts.egg-info/requires.txt
src/toil_scripts.egg-info/top_level.txt
src/toil_scripts/adam_gatk_pipeline/__init__.py
src/toil_scripts/adam_gatk_pipeline/align_and_call.py
src/toil_scripts/adam_gatk_pipeline/mock_inputs.py
src/toil_scripts/adam_pipeline/__init__.py
src/toil_scripts/adam_pipeline/adam_preprocessing.py
src/toil_scripts/adam_uberscript/__init__.py
src/toil_scripts/adam_uberscript/adam_uberscript.py
src/toil_scripts/adam_uberscript/automated_scaling.py
src/toil_scripts/adam_uberscript/boto_lib.py
src/toil_scripts/adam_uberscript/input_files.py
src/toil_scripts/batch_alignment/__init__.py
src/toil_scripts/batch_alignment/bwa_alignment.py
src/toil_scripts/batch_alignment/old_alignment_script/__init__.py
src/toil_scripts/batch_alignment/old_alignment_script/batch_align.py
src/toil_scripts/exome_variant_pipeline/__init__.py
src/toil_scripts/exome_variant_pipeline/exome_variant_pipeline.py
src/toil_scripts/gatk_germline/__init__.py
src/toil_scripts/gatk_germline/germline.py
src/toil_scripts/gatk_processing/__init__.py
src/toil_scripts/gatk_processing/gatk_preprocessing.py
src/toil_scripts/lib/__init__.py
src/toil_scripts/lib/files.py
src/toil_scripts/lib/jobs.py
src/toil_scripts/lib/programs.py
src/toil_scripts/lib/urls.py
src/toil_scripts/rnaseq_cgl/__init__.py
src/toil_scripts/rnaseq_cgl/rnaseq_cgl_pipeline.py
src/toil_scripts/rnaseq_unc/__init__.py
src/toil_scripts/rnaseq_unc/rnaseq_unc_pipeline.py
src/toil_scripts/rnaseq_unc/rnaseq_unc_tcga_versions.py
src/toil_scripts/spark_utils/__init__.py
src/toil_scripts/spark_utils/spawn_cluster.py
src/toil_scripts/spladder_pipeline/__init__.py
src/toil_scripts/spladder_pipeline/spladder_pipeline.py
src/toil_scripts/transfer_tcga_to_s3/__init__.py
src/toil_scripts/transfer_tcga_to_s3/transfer_tcga_to_s3.py