pairk/__init__.py,sha256=a-c5waSAuDZfV71uNluDeXJ0EboI253IFNuVk0du910,1850
pairk/_version.py,sha256=2plzdEEb24FLjE2I2XyBBcJEPYWHccNL4SgtLC_6erg,22
pairk/examples.py,sha256=872GufIRIGYpvG47lRPgOrBAELpBIPvB_X44R3h7t5Y,3095
pairk/py.typed,sha256=o_skYYOgBqbwMt-5lUZDunyM7CcemHaJt2k9MsSACeY,61
pairk/utilities.py,sha256=HLl030u43tkH8dVwRQGH46beC8GwwuHojkSCUrX8K4I,3090
pairk/backend/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pairk/backend/exceptions.py,sha256=0pdrwr0m5kejK4V8mVvVjniXi_vM3jOdVpQZjdJQUJI,1806
pairk/backend/conservation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pairk/backend/conservation/kmer_conservation.py,sha256=n0dSTzX9QGVxq8TjFbtQ6s4boXSk0lVYuTYxZEsqRQ8,15328
pairk/backend/conservation/capra_singh_functions/__init__.py,sha256=8ZwJp6-_4hl-SEZzVhmqcNLluALQf7JLQ-eHOOVKNQo,1998
pairk/backend/conservation/capra_singh_functions/capra_singh_2007_scores.py,sha256=s6xrGg8sOnuhfdCgGHpr4xOctIKDf3R4yIflMw6n0qc,6905
pairk/backend/kmer_alignment/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pairk/backend/kmer_alignment/esm_embedding_distance.py,sha256=WXIFO_cQmpJe4Fqg_aHlaGswlsRD9UUHg2IO99Ld1Oo,9408
pairk/backend/kmer_alignment/needleman_tools.py,sha256=M_IQiJcoxu-MmSLflzoSKsSjpxmwmXTA7uRn81jbVd8,1953
pairk/backend/kmer_alignment/scoring_matrix.py,sha256=Jo-IDvVYo0HYqgr7AXFNdevSC2dMVJwrFnQyVP2lH8Y,8827
pairk/backend/kmer_alignment/scoring_matrix_needleman.py,sha256=54Jxzkp5Ja2PHLfqeOKm_wGZlu68BQX85Z71D1iujfk,4463
pairk/backend/tools/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pairk/backend/tools/esm_tools.py,sha256=nXuDyoQrMXnMtBOUvwJUImviQbpAXiXrdzIM15SMyvk,3840
pairk/backend/tools/matrices.py,sha256=8A3BIOOLWA_CPsR6bt5syE-BnTZMipdV8g8T8cjkCGg,3096
pairk/backend/tools/pairwise_tools.py,sha256=ckX_DiTT90j53GmjIX-XIIinRQoYkXF8YAtgmmJqoa8,7661
pairk/backend/tools/plotting_tools.py,sha256=RzTIbqdCn4mDVsRHDrZlVueRU0raLRsQsoSCuZabjh0,1635
pairk/backend/tools/pssms.py,sha256=NWUPu-75F9kozUgOj8nfza-vHaojGaB6nUEgLmqPlCA,2217
pairk/backend/tools/sequence_utils.py,sha256=6OgqvrYGFRt0AF7LaYv7cFt2T8xkiz4jlgChGE_eDjc,19554
pairk/data/README.md,sha256=SGZUZ4kyexIQuAMmNUHCMzSYRnGJyk8M-bhrp3ltHGc,1685
pairk/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pairk/data/example_alignment_9606_0_00294e-idraln-555_to_971-idr-440_to_665.fasta,sha256=RU64RuyqqSJSHM66oCG4ip0XmvCwspd5k8Y_jckJ8yw,23489
pairk/data/pairk_plotstyle.mplstyle,sha256=4KvXuBIcJ_e35LhPv28h-Dmbgn_sQE4YJnWPwbnwmb0,1563
pairk/data/matrices/BLOSUM62,sha256=hVENOEbubV9HeOQlz42vbg27iJswby0TQ04SVHgO-0A,2122
pairk/data/matrices/EDSSMat50,sha256=oIku5rS9k9C9UcTqiwAS3-s1Btq8y1otGxT5Wjt9AHQ,2190
pairk/data/matrices/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pairk/data/matrices/grantham.csv,sha256=nLP0nZ4KGYJ-t8YEBvLp496fERGkDPRqL8DGY4AWrQ4,1436
pairk/data/matrices/grantham_similarity_norm.csv,sha256=1_giUw9tD764kz1bG-S0Cshkkas-cmJDD-orl2LBjis,7310
pairk/data/matrices/grantham_similarity_normx100_aligner_compatible,sha256=iMc8BP3DAC0ZR2lrpyTUqoJD5F-p84Km7F0bsexhkLI,1288
pairk/single_kmer/__init__.py,sha256=Ex5mI9vi87cftX75gqdEKdyyS6aKwqu5CpPwd6elRsM,435
pairk/tests/__init__.py,sha256=nRKPWsTbB025bJRfX6ZOZayBVXMs3HMdd_JXUPpjWnA,113
pairk/tests/test_pairk.py,sha256=i74-ir6oM5Y5qAwbzHyKMAMVkENYXH6MwouPFvrEzG0,1732
pairk-1.0.3.dist-info/LICENSE,sha256=aEbUKu90I9rTYMe7pp7cWmjCbPzlJvY4L1gkAh3_y-g,1072
pairk-1.0.3.dist-info/METADATA,sha256=bC8CFt8OrAsjONT8LivW3i8gq2iVR6iO824YIxMNRiI,6349
pairk-1.0.3.dist-info/WHEEL,sha256=Z4pYXqR_rTB7OWNDYFOm1qRk0RX6GFP2o8LgvP453Hk,91
pairk-1.0.3.dist-info/top_level.txt,sha256=xttdx3Sxg4_Yj2KzYXSqjtbJ1eW6O9WVEMdajJpcuAA,6
pairk-1.0.3.dist-info/RECORD,,
