Metadata-Version: 2.1
Name: PyGEtoolbox
Version: 0.0.1
Summary: Gene expression toolbox in Python
Home-page: https://github.com/firefly-cpp/PyGEtoolbox
Author: firefly-cpp
License: MIT
Description: # PyGEtoolbox - Gene expression toolbox in Python
        
        ## Objective
        
        
        ## Installation
        
            python setup.py install
        
        ## Features
        
        - Downloading GEO DataSets from Gene Expression Omnibus (GEO) ([see example](examples/download_SOFT_format.py))
        - Downloading RAW format from GEO ([see example](examples/download_RAW_data.py))
        - Downloading CEL files from GEO ([see example](examples/download_CEL_files.py))
        - Parsing SOFT format ([see example](examples/parse_SOFT_format.py))
        - Affymetrix probe set ID to gene id and gene description conversion ([see example](examples/affy_probe_set_id_to_gene_id.py))
        - Differentially Expressed genes analysis (TODO)
        
        ## CODE EXAMPLES:
        
        ```python
        from PyGEtoolbox import *
        
        #downloading GSE from GEO
        series = Download()
        series.download_SOFT_format("GSE105008") 
        
        #downloading GDS from GEO
        datasets = Download()
        datasets.download_SOFT_format("GDS2003") 
        
        #downloading CEL file
        cel = Download()
        cel.download_CEL_file("GSM270781")
        
        #downloading RAW data
        raw_data = Download()
        raw_data.download_RAW_data("GSE41657")
        ```
        
        ```python
        from PyGEtoolbox import *
        
        a = Process_SOFT_format("../SOFT_format/GSE10714_family.soft.gz")  # path to the data
        a.extract_metadata()
        a.print_data()
        a.extract_all_samples()
        ```
        
        ## Bugs
        
        This project will be regularly updated during the 2019. Testing this package is more than welcome. 
        Please report all bugs, suggestions and features that could be added.
Platform: UNKNOWN
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Software Development
Description-Content-Type: text/markdown
