Metadata-Version: 2.1
Name: nwb-conversion-tools
Version: 0.9.3
Summary: Convert data to nwb
Home-page: https://github.com/catalystneuro/nwb-conversion-tools
Author: Ben Dichter, Cody Baker, and Luiz Tauffer
Author-email: ben.dichter@gmail.com
License: UNKNOWN
Description: # NWB conversion tools
        [![PyPI version](https://badge.fury.io/py/nwb-conversion-tools.svg)](https://badge.fury.io/py/nwb-conversion-tools)
        
        NWB Conversion Tools is a package for creating NWB files by converting and 
        combining neural data in proprietary formats and adding essential metadata.
        
        **Under heavy construction. API is changing rapidly.**
        
        
        Features:
        * Command line interface
        * Python API
        * Leverages SpikeExtractor to support conversion from a number or proprietary formats.
        
        ## Installation
        To install **nwb-conversion-tools** directly in an existing environment:
        ```
        $ pip install nwb-conversion-tools
        ```
        
        Alternatively, to clone the repository and set up a conda environment, do:
        ```
        $ git clone https://github.com/catalystneuro/nwb-conversion-tools
        $ cd nwb-conversion-tools
        $ conda env create -f make_env.yml
        $ conda activate nwb_conversion_env
        $ pip install .
        ```
        
        ## Dependencies
        NWB Conversion Tools relies heavily on [SpikeExtractors](https://github.com/SpikeInterface/spikeextractors) for electrophysiology and on [ROIExtractors](https://github.com/catalystneuro/roiextractors) for optophysiology data.
        
        You can use a graphical interface for your converter with [NWB Web GUI](https://github.com/catalystneuro/nwb-web-gui).
        
        
        ## Rebuilding on Read the Docs
        As a maintainer, once the changes to the documentation are on the master branch, go to [https://readthedocs.org/projects/nwb-conversion-tools/](https://readthedocs.org/projects/nwb-conversion-tools/) and click "Build version". Check the console output and its log for any errors.
        
        
        ## Used by
        
        * [Axel lab](https://www.axellab.columbia.edu/): [axel-lab-to-nwb](https://github.com/catalystneuro/axel-lab-to-nwb)
        * Brunton lab: [brunton-lab-to-nwb](https://github.com/catalystneuro/brunton-lab-to-nwb)
        * [Buffalo lab](https://buffalomemorylab.com/): [buffalo-lab-data-to-nwb](https://github.com/catalystneuro/buffalo-lab-data-to-nwb)
        * [Buzsáki Lab](https://buzsakilab.com/wp/): [buzsaki-lab-to-nwb](https://github.com/catalystneuro/buzsaki-lab-to-nwb)
        * [Giocomo lab](https://giocomolab.weebly.com/): [giocomo-lab-to-nwb](https://github.com/catalystneuro/giocomo-lab-to-nwb)
        * [Jaeger lab](https://scholarblogs.emory.edu/jaegerlab/): [jaeger-lab-to-nwb](https://github.com/catalystneuro/jaeger-lab-to-nwb)
        * Mease lab: [mease-lab-to-nwb](https://github.com/catalystneuro/mease-lab-to-nwb)
        * [Movson lab](https://www.cns.nyu.edu/labs/movshonlab/): [movshon-lab-to-nwb](https://github.com/catalystneuro/movshon-lab-to-nwb)
        * [Tolias lab](https://toliaslab.org/): [tolias-lab-to-nwb](https://github.com/catalystneuro/tolias-lab-to-nwb)
        
Keywords: nwb
Platform: UNKNOWN
Requires-Python: >=3.7
Description-Content-Type: text/markdown
