Metadata-Version: 2.1
Name: cumulus-library-covid
Version: 0.1.4
Summary: SQL generation for cumulus covid symptom analysis
Requires-Python: >= 3.9, <3.12
Description-Content-Type: text/markdown
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Dist: cumulus-library >= 0.3.0
Requires-Dist: sqlfluff == 2.0.2
Requires-Dist: black ; extra == "dev"
Requires-Dist: pylint ; extra == "dev"
Project-URL: Documentation, https://docs.smarthealthit.org/cumulus/
Project-URL: Home, https://smarthealthit.org/cumulus-a-universal-sidecar-for-a-smart-learning-healthcare-system/
Project-URL: Source, https://github.com/smart-on-fhir/cumulus-library-covid
Provides-Extra: dev

# Cumulus Library - Covid

A collection of tables for generating bioinfomatics data for studying COVID-19 symptoms. 
Part of the [SMART on FHIR Cumulus Project](https://smarthealthit.org/cumulus-a-universal-sidecar-for-a-smart-learning-healthcare-system/)

For more information, [browse the documentation](https://docs.smarthealthit.org/cumulus/library).

## Usage

To install the module, simply run `pip install cumulus-library-covid`.

This will add a `covid_symptoms` study target to `cumulus-library`.

## Publications

The following publications leveraged this module:

__A computable phenotype for patients with SARS-CoV2 testing that occurred outside the hospital__
Lijing Wang, Amy Zipursky, Alon Geva, Andrew J. McMurry, Kenneth D. Mandl, Timothy A. Miller
JAMIA Open, 2023;, ooad047,doi: https://doi.org/10.1093/jamiaopen/ooad047 

__The SMART Text2FHIR Pipeline__
Timothy A. Miller, Andrew J. McMurry, James Jones, Daniel Gottlieb, Kenneth D. Mandl
medRxiv 2023.03.21.23287499; doi: https://doi.org/10.1101/2023.03.21.23287499 (Preprint)
