MANIFEST.in
setup.cfg
setup.py
version.py
src/toil_scripts/__init__.py
src/toil_scripts.egg-info/PKG-INFO
src/toil_scripts.egg-info/SOURCES.txt
src/toil_scripts.egg-info/dependency_links.txt
src/toil_scripts.egg-info/entry_points.txt
src/toil_scripts.egg-info/requires.txt
src/toil_scripts.egg-info/top_level.txt
src/toil_scripts/adam_gatk_pipeline/__init__.py
src/toil_scripts/adam_gatk_pipeline/align_and_call.py
src/toil_scripts/adam_kmers/__init__.py
src/toil_scripts/adam_kmers/count_kmers.py
src/toil_scripts/adam_pipeline/__init__.py
src/toil_scripts/adam_pipeline/adam_preprocessing.py
src/toil_scripts/bwa_alignment/__init__.py
src/toil_scripts/bwa_alignment/bwa_alignment.py
src/toil_scripts/bwa_alignment/old_alignment_script/__init__.py
src/toil_scripts/bwa_alignment/old_alignment_script/batch_align.py
src/toil_scripts/bwa_alignment/test/__init__.py
src/toil_scripts/bwa_alignment/test/test_bwa_alignment.py
src/toil_scripts/exome_variant_pipeline/__init__.py
src/toil_scripts/exome_variant_pipeline/exome_variant_pipeline.py
src/toil_scripts/exome_variant_pipeline/test/__init__.py
src/toil_scripts/exome_variant_pipeline/test/test_exome.py
src/toil_scripts/gatk_germline/__init__.py
src/toil_scripts/gatk_germline/common.py
src/toil_scripts/gatk_germline/germline.py
src/toil_scripts/gatk_germline/germline_config_manifest.py
src/toil_scripts/gatk_germline/hard_filter.py
src/toil_scripts/gatk_germline/vqsr.py
src/toil_scripts/rnaseq_unc/__init__.py
src/toil_scripts/rnaseq_unc/rnaseq_unc_pipeline.py
src/toil_scripts/rnaseq_unc/rnaseq_unc_tcga_versions.py
src/toil_scripts/spladder_pipeline/__init__.py
src/toil_scripts/spladder_pipeline/spladder_pipeline.py
src/toil_scripts/transfer_tcga_to_s3/__init__.py
src/toil_scripts/transfer_tcga_to_s3/transfer_tcga_to_s3.py