LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
docs/Makefile
docs/README.md
docs/img/notebooks/simple_var_overlap.png
docs/img/notebooks/simple_var_region_generation.png
docs/img/overview/mutationmap_query_to_region_bed.png
docs/img/overview/variant_effect_prediction_intro.png
docs/img/overview/variant_effect_prediction_intro_complex.png
docs/img/overview/variant_effect_prediction_simple.png
docs/img/overview/vep.png
docs/img/overview/vep_centered.png
docs/img/overview/vep_restr_bed.png
docs/templates/mutation_map.md
docs/templates/overview.md
docs/templates/using.md
docs/templates/variant_effect_pred.md
docs/theme_dir/img/notebooks/simple_var_overlap.png
docs/theme_dir/img/notebooks/simple_var_region_generation.png
docs/theme_dir/img/overview/mutationmap_query_to_region_bed.png
docs/theme_dir/img/overview/variant_effect_prediction_intro.png
docs/theme_dir/img/overview/variant_effect_prediction_intro_complex.png
docs/theme_dir/img/overview/variant_effect_prediction_simple.png
docs/theme_dir/img/overview/vep.png
docs/theme_dir/img/overview/vep_centered.png
docs/theme_dir/img/overview/vep_restr_bed.png
docs/theme_dir/veff-docs/img/notebooks/simple_var_overlap.png
docs/theme_dir/veff-docs/img/notebooks/simple_var_region_generation.png
docs/theme_dir/veff-docs/img/overview/mutationmap_query_to_region_bed.png
docs/theme_dir/veff-docs/img/overview/variant_effect_prediction_intro.png
docs/theme_dir/veff-docs/img/overview/variant_effect_prediction_intro_complex.png
docs/theme_dir/veff-docs/img/overview/variant_effect_prediction_simple.png
docs/theme_dir/veff-docs/img/overview/vep.png
docs/theme_dir/veff-docs/img/overview/vep_centered.png
docs/theme_dir/veff-docs/img/overview/vep_restr_bed.png
docs/veff-docs/img/notebooks/simple_var_overlap.png
docs/veff-docs/img/notebooks/simple_var_region_generation.png
docs/veff-docs/img/overview/mutationmap_query_to_region_bed.png
docs/veff-docs/img/overview/variant_effect_prediction_intro.png
docs/veff-docs/img/overview/variant_effect_prediction_intro_complex.png
docs/veff-docs/img/overview/variant_effect_prediction_simple.png
docs/veff-docs/img/overview/vep.png
docs/veff-docs/img/overview/vep_centered.png
docs/veff-docs/img/overview/vep_restr_bed.png
kipoi_veff/__init__.py
kipoi_veff/__main__.py
kipoi_veff/cli.py
kipoi_veff/logging.conf
kipoi_veff/mutation_map.py
kipoi_veff/parsers.py
kipoi_veff/scores.py
kipoi_veff/snv_predict.py
kipoi_veff/specs.py
kipoi_veff.egg-info/PKG-INFO
kipoi_veff.egg-info/SOURCES.txt
kipoi_veff.egg-info/dependency_links.txt
kipoi_veff.egg-info/not-zip-safe
kipoi_veff.egg-info/requires.txt
kipoi_veff.egg-info/top_level.txt
kipoi_veff/external/__init__.py
kipoi_veff/external/concise/__init__.py
kipoi_veff/external/concise/seqplotting_deps.py
kipoi_veff/external/concise/seqplotting_letters.py
kipoi_veff/utils/__init__.py
kipoi_veff/utils/dna_reshapers.py
kipoi_veff/utils/generic.py
kipoi_veff/utils/io.py
kipoi_veff/utils/mutators.py
kipoi_veff/utils/plot.py
kipoi_veff/utils/scoring_fns.py