Metadata-Version: 2.4
Name: napari-omero-downloader-cci
Version: 0.1.5
Summary: A plugin that allows napari to connect to the Omero CCI server to visualize and download image data
Author: Simon Leclerc
Author-email: simon.leclerc@gu.se
License: 
        The MIT License (MIT)
        
        Copyright (c) 2025 Simon Leclerc
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in
        all copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
        THE SOFTWARE.
        
Project-URL: Bug Tracker, https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci/issues
Project-URL: Documentation, https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci#README.md
Project-URL: Source Code, https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci
Project-URL: User Support, https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci/issues
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Image Processing
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: magicgui
Requires-Dist: qtpy
Requires-Dist: scikit-image
Requires-Dist: dask
Provides-Extra: all
Requires-Dist: napari[all]; extra == "all"
Dynamic: license-file

# napari-omero-downloader-cci

[![License MIT](https://img.shields.io/pypi/l/napari-omero-downloader-cci.svg?color=green)](https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/napari-omero-downloader-cci.svg?color=green)](https://pypi.org/project/napari-omero-downloader-cci)
[![Python Version](https://img.shields.io/pypi/pyversions/napari-omero-downloader-cci.svg?color=green)](https://python.org)
[![tests](https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci/workflows/tests/badge.svg)](https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci/actions)
[![codecov](https://codecov.io/gh/CCI-GU-Sweden/napari-omero-downloader-cci/branch/main/graph/badge.svg)](https://codecov.io/gh/CCI-GU-Sweden/napari-omero-downloader-cci)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-omero-downloader-cci)](https://napari-hub.org/plugins/napari-omero-downloader-cci)
[![npe2](https://img.shields.io/badge/plugin-npe2-blue?link=https://napari.org/stable/plugins/index.html)](https://napari.org/stable/plugins/index.html)
[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-purple.json)](https://github.com/copier-org/copier)

A plugin that allows napari to connect to the Omero CCI server to visualize and download image data

----------------------------------

This [napari] plugin was generated with [copier] using the [napari-plugin-template] (None).

## Installation

### First napari installation

First install miniconda from conda forge: [https://conda-forge.org/download/].

Recommanded, create an environment for napari, bundling both napari and omero

```
conda create -n napari -c conda-forge napari omero-py pyqt pyside2 --yes
conda activate napari
napari
```

### Already python installed napari

In this case, activate your environment and install Omero:

```
conda install -c conda-forge omero-py --yes
```

### Plugin installation

You can install `napari-omero-downloader-cci` via [pip]:

```
pip install napari-omero-downloader-cci
```

To install latest development version :

```
pip install git+https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci.git
```

—or, during development—

```
pip install -e .
```

## Running the plugin after Installation

You will need to open the conda-forge preogram, then:

```
conda activate napari
napari
```

The plug will be in the plugin tab.

## Warning about standalone napari

A standalone version of napari is available, and the plugin will be available on the napari hub. However, installation through the standalone app is not recommanded, since it relies on pip which does not distribute system ready dependancy for Ice.


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [MIT] license,
"napari-omero-downloader-cci" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[copier]: https://copier.readthedocs.io/en/stable/
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[napari-plugin-template]: https://github.com/napari/napari-plugin-template

[file an issue]: https://github.com/CCI-GU-Sweden/napari-omero-downloader-cci/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
