[91mrun[0m /home/dralph/work/partis/bin/FastTree -gtr -nt -out /home/dralph/work/partis/test/paired/new-results-slow/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-7/fasttree.out /home/dralph/work/partis/test/paired/new-results-slow/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-7/input-seqs.fa
FastTree Version 2.1.10 SSE3
Alignment: /home/dralph/work/partis/test/paired/new-results-slow/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-7/input-seqs.fa
Nucleotide distances: Jukes-Cantor Joins: balanced Support: SH-like 1000
Search: Normal +NNI +SPR (2 rounds range 10) +ML-NNI opt-each=1
TopHits: 1.00*sqrtN close=default refresh=0.80
ML Model: Generalized Time-Reversible, CAT approximation with 20 rate categories
Ignored unknown character X (seen 12 times)
Initial topology in 0.00 seconds
Refining topology: 4 rounds ME-NNIs, 2 rounds ME-SPRs, 2 rounds ML-NNIs
Total branch-length 0.008 after 0.00 sec
ML-NNI round 1: LogLk = -554.571 NNIs 0 max delta 0.00 Time 0.00
Turning off heuristics for final round of ML NNIs
GTR Frequencies: 0.2287 0.2429 0.2972 0.2313
GTR rates(ac ag at cg ct gt) 1.2063 0.0184 1.2781 0.0184 0.0184 1.0000
Switched to using 20 rate categories (CAT approximation)
Rate categories were divided by 0.625 so that average rate = 1.0
CAT-based log-likelihoods may not be comparable across runs
Use -gamma for approximate but comparable Gamma(20) log-likelihoods
ML-NNI round 2: LogLk = -549.203 NNIs 0 max delta 0.00 Time 0.01
Turning off heuristics for final round of ML NNIs (converged)
Optimize all lengths: LogLk = -549.203 Time 0.01
Total time: 0.02 seconds Unique: 2/11 Bad splits: 0/0