Metadata-Version: 2.1
Name: foundation-cancer-image-biomarker
Version: 1.0.1a3
Summary: Official repo for Foundation Models for Quantitative Biomarker Discovery in Cancer Imaging [INSERT DOI]
Home-page: https://aim.hms.harvard.edu/foundation-cancer-image-biomarker
License: MIT
Author: Suraj Pai
Author-email: bspai@bwh.harvard.edu
Requires-Python: >=3.9,<3.12
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Dist: aiohttp (>=3.9.1,<4.0.0)
Requires-Dist: dcmrtstruct2nii (>=5,<6)
Requires-Dist: fonttools (>=4.44.0,<5.0.0)
Requires-Dist: google-cloud-storage (>=2.9.0,<3.0.0)
Requires-Dist: itk (>=5.3.0,<6.0.0)
Requires-Dist: lightly (==1.4.19)
Requires-Dist: matplotlib (>=3.7.1,<4.0.0)
Requires-Dist: mpmath (==1.3.0)
Requires-Dist: nibabel (>=5.1.0,<6.0.0)
Requires-Dist: pip (>=24.0,<25.0)
Requires-Dist: platipy (==0.4.1)
Requires-Dist: project-lighter (==0.0.2a19)
Requires-Dist: pydantic (==1.10.13)
Requires-Dist: pydicom (>=2.4.0,<3.0.0)
Requires-Dist: pydicom-seg (>=0.4.1,<0.5.0)
Requires-Dist: pynrrd (>=1.0.0,<2.0.0)
Requires-Dist: scipy (==1.10.0)
Requires-Dist: thedicomsort (>=1.0.1,<2.0.0)
Requires-Dist: tornado (>=6.4,<7.0)
Requires-Dist: urllib3 (>=2.1.0,<3.0.0)
Requires-Dist: wandb (>=0.16.3,<0.17.0)
Requires-Dist: werkzeug (>=3.0.1,<4.0.0)
Requires-Dist: wget (>=3.2,<4.0)
Project-URL: Repository, https://github.com/AIM-Harvard/foundation-cancer-image-biomarker
Description-Content-Type: text/markdown


<div align="center">
This is the official repository for the paper
<br/><br/>
</div>

<div style="display: flex; flex-direction: column; align-items: center;">
    <img src="./docs/assets/Header.png" style="width: 100%;"/>
    <div style="display: flex; justify-content: space-between; width: 100%;">
        <img src="./docs/assets/Mhub_image.png" style="width: 49%;"/>
        <img src="./docs/assets/Mhub_image2.png" style="width: 50%;"/>
    </div>
    <a href="https://www.nature.com/articles/s42256-024-00807-9"><img src="./docs/assets/readpaper_logo.png" style="width: 100%;"></a>
</div>

<br/><br/>
<div align="center">

[![Build Status](https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/actions/workflows/build.yml/badge.svg)](https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/actions/workflows/build.yml)
[![Python Version](https://img.shields.io/pypi/pyversions/foundation-cancer-image-biomarker.svg)](https://pypi.org/project/foundation-cancer-image-biomarker/)
[![Dependencies Status](https://img.shields.io/badge/dependencies-up%20to%20date-brightgreen.svg)](https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/pulls?utf8=%E2%9C%93&q=is%3Apr%20author%3Aapp%2Fdependabot)
[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![Security: bandit](https://img.shields.io/badge/security-bandit-green.svg)](https://github.com/PyCQA/bandit)
[![Pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white)](https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/blob/master/.pre-commit-config.yaml)
[![Semantic Versions](https://img.shields.io/badge/%20%20%F0%9F%93%A6%F0%9F%9A%80-semantic--versions-e10079.svg)](https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/releases)
[![License](https://img.shields.io/github/license/AIM-Harvard/foundation-cancer-image-biomarker)](https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/blob/master/LICENSE)
[![Coverage](docs/assets/images/coverage.svg)](https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/blob/master/docs/assets/images/coverage.svg)



---
**NOTE:**
 For detailed documentation check our [website](https://aim-harvard.github.io/foundation-cancer-image-biomarker/) 

---

</div>

