Metadata-Version: 2.1
Name: bdgenomics.mango.pileup
Version: 0.0.6a0
Summary: bdgenomics.mango.pileup
Home-page: http://jupyter.org
Author: Alyssa Morrow
Author-email: akmorrow@berkeley.edu
License: UNKNOWN
Description: # bdgenomics.mango.pileup
        
        bdgenomics.mango.pileup is a Jupyter widget that allows users to view genomic reads, variants and features in a python notebook.
        bdgenomics.mango.pileup builds off of [pileup.js](https://github.com/hammerlab/pileup.js).
        
        ## Installation 
        
        ### from pip:
        
            $ pip install bdgenomics.mango.pileup
            $ jupyter nbextension enable --py --sys-prefix bdgenomics.mango.pileup  # can be skipped for notebook version 5.3 and above
        
        
        ### from Source:
        
        For a development installation (requires npm >= 3.10.10 and node.js >= 6.11.0),
        
            $ git clone https://github.com/bdgenomics/mango
            $ cd mango-viz
            $ rm -r bdgenomics/mango/pileup/static
        
        Install bdgenomics.mango.pileup:
        
            $ pip install -e .
            $ jupyter nbextension install --py --symlink --sys-prefix bdgenomics.mango.pileup
            $ jupyter nbextension enable --py --sys-prefix bdgenomics.mango.pileup
        
        
        After pileup.js is installed once, you can just run the following for development:
        
            $ cd mango-viz
            $ rm -r bdgenomics/mango/pileup/static/
            $ pip install -e .
            $ jupyter nbextension install --py --symlink --sys-prefix bdgenomics.mango.pileup
            $ jupyter nbextension enable --py --sys-prefix bdgenomics.mango.pileup
        
        For running examples:
        
            $ First run installation, explained above.
            $ cd examples
            $ jupyter notebook
        
        
        For javascript development type checking:
        
            $ cd js
            $ npm run test
        
Keywords: ipython,jupyter,widgets
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Framework :: IPython
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Multimedia :: Graphics
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Description-Content-Type: text/markdown
