Metadata-Version: 2.1
Name: genome_info
Version: 1.0.2
Summary: Python package genome annotations
Home-page: https://github.com/kylessmith/genome_info
License: GPL-2.0-or-later
Keywords: cython,annotation,genome
Author: Kyle S. Smith
Author-email: kyle.smith@stjude.org
Maintainer: Kyle S. Smith
Maintainer-email: kyle.smith@stjude.org
Requires-Python: >=3.10,<4.0
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Cython
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Dist: cython (>=0.29.32,<0.30.0)
Requires-Dist: intervalframe (>=1.1.3,<2.0.0)
Requires-Dist: numpy (>=1.23.5,<2.0.0)
Requires-Dist: pandas (>=1.5.2,<2.0.0)
Requires-Dist: tqdm (>=4.65.0,<5.0.0)
Project-URL: Documentation, https://www.biosciencestack.com/static/genome_info/docs/index.html
Project-URL: Repository, https://github.com/kylessmith/genome_info
Description-Content-Type: text/markdown

# hg38genome

[![Build Status](https://travis-ci.org/kylessmith/hg19_genome.svg?branch=master)](https://travis-ci.org/kylessmith/hg38genome) [![PyPI version](https://badge.fury.io/py/hg19_genome.svg)](https://badge.fury.io/py/hg38genome)
[![Coffee](https://img.shields.io/badge/-buy_me_a%C2%A0coffee-gray?logo=buy-me-a-coffee&color=ff69b4)](https://www.buymeacoffee.com/kylessmith)

A package to work with hg38 genomic intervals.


## Install

If you dont already have numpy and scipy installed, it is best to download
`Anaconda`, a python distribution that has them included.  
```
    https://continuum.io/downloads
```

Dependencies can be installed by:

```
    pip install -r requirements.txt
```

PyPI install, presuming you have all its requirements installed:
```
    pip install hg38genome(not yet!!)
```

## Usage

```python
# ailist version: 0.1.7
from hg38genome import Hg38Genome
genome = Hg38Genome()
genome.n_CpGs

genome.n_bases

genome.tss()

genome.tss(upstream=1000, downstream=1000)

```


