LICENSE
MANIFEST.in
README.md
setup.py
IBSPy/IBSPy_results.py
IBSPy/IBSpy_plot.py
IBSPy/IBSpy_plot_window_results.py
IBSPy/IBSpy_results.py
IBSPy/IBSpy_window_count.py
IBSPy/__init__.py
IBSPy/jellyfish_kmer_database.py
IBSPy/kmc3_kmer_database.py
IBSPy/kmerGWAS_kmer.py
IBSPy/kmer_database.py
IBSpy/IBSPy_results.py
IBSpy/IBSpy_plot.py
IBSpy/IBSpy_plot_window_results.py
IBSpy/IBSpy_results.py
IBSpy/IBSpy_window_count.py
IBSpy/__init__.py
IBSpy/jellyfish_kmer_database.py
IBSpy/kmc3_kmer_database.py
IBSpy/kmerGWAS_kmer.py
IBSpy/kmer_database.py
IBSpy.egg-info/PKG-INFO
IBSpy.egg-info/SOURCES.txt
IBSpy.egg-info/dependency_links.txt
IBSpy.egg-info/entry_points.txt
IBSpy.egg-info/top_level.txt
IBSpy/kmerGWAS/kmer_db.c
IBSpy/kmerGWAS/kmer_db.h
IBSpy/kmerGWAS/kmer_general.c
IBSpy/kmerGWAS/kmer_general.h
IBSpy/kmerGWAS/kmer_gwas.c
IBSpy/kmerGWAS/kmer_gwas.pxd
IBSpy/kmerGWAS/kmer_gwas.pyx
IBSpy/kmerGWAS/nucleotide.c
IBSpy/kmerGWAS/nucleotide.h
tests/ibspy_out.txt
tests/integration_cpp.sh
tests/integration_python.sh
tests/test_fasta.py
tests/test_jellyfish.py
tests/test_kmc3.py
tests/test_kmerGWAS.py
tests/test_results.py
tests/data/ibspy_integration_test.txt
tests/data/jag_vs_sta.fa
tests/data/jag_vs_sta_aln.fa
tests/data/short_test.fa
tests/data/short_test.fa.fai
tests/data/short_test_duplicate.fa
tests/data/short_test_duplicate.fa.fai
tests/data/test4B.arinalrfor.fa
tests/data/test4B.arinalrfor.fa.fai
tests/data/test4B.jagger.fa
tests/data/test4B.jagger.fa.fai
tests/data/test4B.jagger.fa.k31.jf
tests/data/test4B.jagger.kmc_k31.kmc_pre
tests/data/test4B.jagger.kmc_k31.kmc_suf
tests/data/test4B.jagger.kmerGWAS_k31
tests/data/test4B.jagger.temp.kmerGWAS_k31
tests/data/test4B.julius.fa
tests/data/test4B.julius.fa.fai
tests/data/test4B.lancer.fa
tests/data/test4B.lancer.fa.fai
tests/data/test4B.landmark.fa
tests/data/test4B.landmark.fa.fai
tests/data/test4B.mace.fa
tests/data/test4B.mace.fa.fai
tests/data/test4B.norin61.fa
tests/data/test4B.norin61.fa.fai
tests/data/test4B.spelta.fa
tests/data/test4B.spelta.fa.fai
tests/data/test4B.stanley.fa
tests/data/test4B.stanley.fa.fai
tests/data/test4B.stanley.rev.fa
tests/data/test4B.stanley.rev.fa.fai
tests/data/test4B.sy_mattis.fa
tests/data/test4B.sy_mattis.fa.fai
tests/plots_data/kmeribs-Wheat_Jagger-Flame.tsv.gz
tests/plots_data/test_chr_sizes_jagger.tsv
tests/plots_data/test_kmeribs-Wheat_Jagger-Flame.tsv
tests/plots_data/test_run_arguments.sh
tests/plots_data/expected_output/gmm_ibs.tsv.gz
tests/plots_data/expected_output/gmm_plots.pdf