Metadata-Version: 2.1
Name: metadownload
Version: 0.1.0
Summary: python mlst analysis tool
Home-page: https://github.com/hbucqp/metadownload
Author: Qingpo Cui
Author-email: cqp@cau.edu.cn
License: MIT Licence
Keywords: wgs,pubmlst,mlst
Platform: any
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Description-Content-Type: text/markdown
Requires-Dist: pandas
Requires-Dist: setuptools

# metadownload
此脚本为下载NCBI中biosample相关字段信息的python脚本


## Installation
```
pip3 install cvmmlst
```

## Dependency
- [E-utilities](https://www.ncbi.nlm.nih.gov/books/NBK179288/)

**you should add E-utilities in your PATH**

## Usage

```
usage: download_biosample.py -list <biosample_acc_list> -outdir <output>

optional arguments:
  -h, --help      show this help message and exit
  -list LIST      <file>: biosample_acc_list, one accession per line
  -outdir OUTDIR  <path>: output directory name
```

## Output

You will get text file contains metainfo for each biosample accession named with the accession number and a csv format summary file


