README.md
setup.cfg
setup.py
Pyvolve.egg-info/PKG-INFO
Pyvolve.egg-info/SOURCES.txt
Pyvolve.egg-info/dependency_links.txt
Pyvolve.egg-info/requires.txt
Pyvolve.egg-info/top_level.txt
src/__init__.py
src/empirical_matrices.py
src/evolver.py
src/genetics.py
src/matrix_builder.py
src/model.py
src/newick.py
src/parameters_sanity.py
src/partition.py
src/state_freqs.py
tests/__init__.py
tests/evolver_test.py
tests/matrix_builder_test.py
tests/model_test.py
tests/newick_test.py
tests/parameters_sanity_test.py
tests/state_freqs_test.py
tests/evolFiles/single_part_no_het_rates.txt
tests/evolFiles/two_part_no_het_rates.txt
tests/freqFiles/testFreq_amino_aln.fasta
tests/freqFiles/testFreq_codon_aln.fasta