Metadata-Version: 2.1
Name: NucDetect
Version: 0.11.14.dev2
Summary: Module to identify intranuclear proteins on basis of fluorescence images.
Home-page: https://github.com/SilMon/NucDetect
Author: Romano Weiss
License: UNKNOWN
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3.7
Description-Content-Type: text/markdown
Requires-Dist: tensorflow (==2.0.0)
Requires-Dist: numpy (>=1.18.1)
Requires-Dist: scikit-image (>=0.16.2)
Requires-Dist: matplotlib (>=3.1.3)
Requires-Dist: pyqt5 (>=5.14.1)
Requires-Dist: numba (>=0.48.0)
Requires-Dist: pillow (>=7.0.0)
Requires-Dist: qtawesome (>=0.6.1)
Requires-Dist: piexif (>=1.1.3)

[![PyPI version](https://badge.fury.io/py/NucDetect.svg)](https://badge.fury.io/py/NucDetect)

NucDetect - A python package for Detection and Quantification of DNA Doublestrand Breaks
============

NucDetect is a Python package for the detection and quantification of γH2AX and 53BP1 foci inside nuclei. Its written in 
pure Python 3.7, obeys the PEP 8 style guidelines and includes PEP 484 type hints as well as Epytext docstrings.

### Note

The current release is a very early alpha version. Please report report any detected bugs and/or improvement suggestions.

Requirements
============

NucDetect is compatible with Windows, Mac OS X and Linux operating systems. It requires 
the following packages:

* tensorflow>=2.1.0
* numpy>=1.18.1
* scikit-image>=0.16.2
* matplotlib>=3.1.3
* pyqt5>=5.14.1
* numba>=0.48.0
* pillow>=7.0.0
* qtawesome>=0.6.1
* piexif>=1.1.3

Installation
============
Run the following commands to clone and install from GitHub

```console
$ git clone https://github.com/SilMon/NucDetect.git
```

or pypi
```console
python3 -m pip install NucDetect
```

Start
============
The program can be started by running the NucDetectAppQT.py:
```console
cd %UserProfile%/AppData/local/Programs/Python/python37/Lib/site-packages/gui
python -m NucDetectAppQT
```

### Supported Image Formats

Following image formats are supported by NucDetect:
* TIFF
* PNG
* JPG
* BMP

___

Author: Romano Weiss

Co-Author: Stefan Rödiger


